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Extended gene catalogue features. ( a ) Expressions of the newly modelled genes compared to expression of the <t>Ensembl</t> genes and background noise, here given in the liver. The red line corresponds to the 0.1 TPM threshold. ( b ) Heatmap of the overlap between databases expressed in % of LNC (in line) shared among databases (in column), using 1 bp-or-more overlap. The number of LNC per database is mentioned in line. ( c ) The extended catalogue gathers 6.5 × more lncRNA genes and 1.1 × more PCG compared to Ensembl alone. ( d ) Correlation of LNC gene density to protein-coding gene density across the chicken macro-, medium- and micro-chromosomes. TPM: Transcript Per Million, chr: chromosome, Mb: Megabase.
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Extended gene catalogue features. ( a ) Expressions of the newly modelled genes compared to expression of the <t>Ensembl</t> genes and background noise, here given in the liver. The red line corresponds to the 0.1 TPM threshold. ( b ) Heatmap of the overlap between databases expressed in % of LNC (in line) shared among databases (in column), using 1 bp-or-more overlap. The number of LNC per database is mentioned in line. ( c ) The extended catalogue gathers 6.5 × more lncRNA genes and 1.1 × more PCG compared to Ensembl alone. ( d ) Correlation of LNC gene density to protein-coding gene density across the chicken macro-, medium- and micro-chromosomes. TPM: Transcript Per Million, chr: chromosome, Mb: Megabase.
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Extended gene catalogue features. ( a ) Expressions of the newly modelled genes compared to expression of the <t>Ensembl</t> genes and background noise, here given in the liver. The red line corresponds to the 0.1 TPM threshold. ( b ) Heatmap of the overlap between databases expressed in % of LNC (in line) shared among databases (in column), using 1 bp-or-more overlap. The number of LNC per database is mentioned in line. ( c ) The extended catalogue gathers 6.5 × more lncRNA genes and 1.1 × more PCG compared to Ensembl alone. ( d ) Correlation of LNC gene density to protein-coding gene density across the chicken macro-, medium- and micro-chromosomes. TPM: Transcript Per Million, chr: chromosome, Mb: Megabase.
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Image Search Results


Journal: eLife

Article Title: Lipocalin-2 is an anorexigenic signal in primates

doi: 10.7554/eLife.58949

Figure Lengend Snippet:

Article Snippet: Software, algorithm , SAS v9.4 , SAS , RRID: SCR_008567 , https://www.sas.com.

Techniques: Sequencing, Amplification, Clone Assay, Plasmid Preparation, Recombinant, Clinical Proteomics, Autoradiography, Immunofluorescence, Enzyme-linked Immunosorbent Assay, Software

Extended gene catalogue features. ( a ) Expressions of the newly modelled genes compared to expression of the Ensembl genes and background noise, here given in the liver. The red line corresponds to the 0.1 TPM threshold. ( b ) Heatmap of the overlap between databases expressed in % of LNC (in line) shared among databases (in column), using 1 bp-or-more overlap. The number of LNC per database is mentioned in line. ( c ) The extended catalogue gathers 6.5 × more lncRNA genes and 1.1 × more PCG compared to Ensembl alone. ( d ) Correlation of LNC gene density to protein-coding gene density across the chicken macro-, medium- and micro-chromosomes. TPM: Transcript Per Million, chr: chromosome, Mb: Megabase.

Journal: Scientific Reports

Article Title: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

doi: 10.1038/s41598-020-77586-x

Figure Lengend Snippet: Extended gene catalogue features. ( a ) Expressions of the newly modelled genes compared to expression of the Ensembl genes and background noise, here given in the liver. The red line corresponds to the 0.1 TPM threshold. ( b ) Heatmap of the overlap between databases expressed in % of LNC (in line) shared among databases (in column), using 1 bp-or-more overlap. The number of LNC per database is mentioned in line. ( c ) The extended catalogue gathers 6.5 × more lncRNA genes and 1.1 × more PCG compared to Ensembl alone. ( d ) Correlation of LNC gene density to protein-coding gene density across the chicken macro-, medium- and micro-chromosomes. TPM: Transcript Per Million, chr: chromosome, Mb: Megabase.

Article Snippet: Since this work proposes a GTF build on the Ensembl v94 annotation in Gallus_gallus-5.0 genome coordinates, we also generated an extended version of the Ensembl v100 annotation of the new Gallus gallus genome reference ( GRCg6a ), comprising genes present in our present catalogue that did not overlap genes from the Ensembl v100 annotation.

Techniques: Expressing